GLOBETROTTER

Usage:

First load the module

ibestadm@styx ~ $ module load R globetrotter
ibestadm@styx ~ $ module list
Currently Loaded Modulefiles:
  1) R/3.1.3            2) globetrotter/1.0

Set up a working directory and copy in the necessary files:

ibestadm@styx ~ $ mkdir globetrotter && cd globetrotter
ibestadm@styx ~/globetrotter $ cp -r /opt/modules/biology/globetrotter/1.0/bin/GLOBETROTTERCompanion.so /opt/modules/biology/globetrotter/1.0/example ./

Run GLOBETROTTER

ibestadm@styx ~/globetrotter $ R < /opt/modules/biology/globetrotter/1.0/bin/GLOBETROTTER.R \
 example/BrahuiYorubaSimulation.paramfile.txt \
 example/BrahuiYorubaSimulation.samplesfile.txt  \
 example/BrahuiYorubaSimulation.recomfile.txt \
 --no-save > output.out